MolNFT v1 · #106363 · protein
Crystal structure of L. monocytogenes psta
4RWX · LMO2692 protein: “Crystal structure of L. monocytogenes psta”. X-ray diffraction, 3 pockets (best druggability 0.40). MolNFT v1 #106363 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4RWX
- Type
- protein
- Length
- 237 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LMO2692 protein
- UniProt
- Q8Y3Y7
- Pockets
- 3 · best druggability 0.40
Structure
x-ray diffraction · 3 distinct chains · 30% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LMO2692 protein | protein | 76 | 34% helix, 43% strand | Q8Y3Y7 |
| B | LMO2692 protein | protein | 84 | 27% helix, 49% strand | Q8Y3Y7 |
| C | LMO2692 protein | protein | 77 | 30% helix, 47% strand | Q8Y3Y7 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 112 | 0.40 | 0.76 | 24 | empty |
| 2 | 82 | 0.35 | 0.75 | 21 | empty |
| 3 | 83 | 0.32 | 0.73 | 24 | empty |
Interfaces
3 interfaces between chains.
- B–C · 1012 Ų buried · 19 hydrogen bonds · protein-protein
- A–B · 936 Ų buried · 15 hydrogen bonds · protein-protein
- A–C · 822 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4RWX · Crystal Structure of L. monocytogenes PstA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y3Y7
- Elsewhere: RCSB PDB 4RWX · PDBe 4RWX · UniProt Q8Y3Y7
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