MolNFT v1 · #106304 · protein
Crystal structure of mtmc in complex with sah
4RV9 · D-mycarose 3-C-methyltransferase: “Crystal structure of mtmc in complex with sah”. X-ray diffraction, 3 ligands (SAH, ZN, CL), 1 pocket (best druggability 0.83). MolNFT v1 #106304 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4RV9
- Type
- protein
- Length
- 419 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-mycarose 3-C-methyltransferase
- Ligands
- SAH, ZN, CL
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-mycarose 3-C-methyltransferase | protein | 419 | 38% helix, 22% strand | — |
Ligands and binding sites
- SAH · S-adenosyl-L-homocysteine · ligand · chains A
- ZN · Zinc ion · metal · chains A
- CL · Chloride ion · ion · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1066 | 0.83 | 0.84 | 88 | SAH, CL |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
- 4RV9 · Crystal structure of MtmC in complex with SAH · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4RV9 · PDBe 4RV9
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