MolNFT v1 · #106291 · protein
The crystal structure of ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE from beutenbergia cavernae dsm 12333
4RUW: “The crystal structure of ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE from beutenbergia cavernae dsm 12333”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.49). MolNFT v1 #106291 on GenesisL1: 3D structure, binding sites…
- PDB
- 4RUW
- Type
- protein
- Length
- 386 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE
- EC
- 3.1.4.-
- UniProt
- C5C3L1
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE (EC 3.1.4.-) | protein | 386 | 18% helix, 41% strand | C5C3L1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.49 | 0.85 | 24 | empty |
| 2 | 206 | 0.46 | 0.74 | 35 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 4RUW · The crystal structure of endonuclease/exonuclease/phosphatase from Beutenbergia cavernae… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5C3L1
- Elsewhere: RCSB PDB 4RUW · PDBe 4RUW · UniProt C5C3L1
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