MolNFT v1 · #106211 · protein
Structure of a putative lipolytic protein of G-D-S-L family from desulfitobacterium hafniense dcb-2
4RSH · Lipolytic protein G-D-S-L family: “Structure of a putative lipolytic protein of G-D-S-L family from desulfitobacterium hafniense dcb-2”. X-ray diffraction, 1 ligand (CL), 4 pockets (best druggability 0.58). MolNFT v1 #106211 on…
- PDB
- 4RSH
- Type
- protein
- Length
- 525 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipolytic protein G-D-S-L family
- UniProt
- B8FVL4
- Ligands
- CL
- Pockets
- 4 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Lipolytic protein G-D-S-L family | protein | 175 | 49% helix, 15% strand | B8FVL4 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 354 | 0.58 | 0.76 | 36 | CL |
| 2 | 288 | 0.53 | 0.75 | 32 | empty |
| 3 | 136 | 0.41 | 0.75 | 22 | empty |
| 4 | 83 | 0.31 | 0.72 | 22 | empty |
Interfaces
2 interfaces between chains.
- A–B · 500 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 184 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 4RSH · Structure of a putative lipolytic protein of G-D-S-L family from Desulfitobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8FVL4
- Elsewhere: RCSB PDB 4RSH · PDBe 4RSH · UniProt B8FVL4
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