MolNFT v1 · #106006 · protein
The crystal structure of acyl-CoA dehydrogenase from slackia heliotrinireducens dsm 20476
4RM7: “The crystal structure of acyl-CoA dehydrogenase from slackia heliotrinireducens dsm 20476”. X-ray diffraction, 4 pockets (best druggability 0.71). MolNFT v1 #106006 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4RM7
- Type
- protein
- Length
- 375 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acyl-CoA dehydrogenase
- EC
- 1.3.8.1
- UniProt
- C7N4Y3
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acyl-CoA dehydrogenase (EC 1.3.8.1) | protein | 375 | 55% helix, 14% strand | C7N4Y3 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 501 | 0.71 | 0.80 | 44 | empty |
| 2 | 156 | 0.59 | 0.83 | 22 | empty |
| 3 | 94 | 0.41 | 0.78 | 14 | empty |
| 4 | 52 | 0.35 | 0.79 | 12 | empty |
Modifications
Observed in the structure: 13 modified (engineered).
Compared structures
- 4RM7 · The crystal structure of acyl-COA dehydrogenase from Slackia heliotrinireducens DSM 20476 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7N4Y3
- Elsewhere: RCSB PDB 4RM7 · PDBe 4RM7 · UniProt C7N4Y3
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