MolNFT v1 · #106005 · protein

Crystal structure of hemopexin binding protein

4RM6 · HEME/HEMOPEXIN-binding protein: “Crystal structure of hemopexin binding protein”. X-ray diffraction, 8 pockets (best druggability 0.52). MolNFT v1 #106005 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4RM6
Type: protein
Length: 781 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: HEME/HEMOPEXIN-binding protein
UniProt: P44602
Pockets: 8 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	HEME/HEMOPEXIN-binding protein	protein	781	6% helix, 50% strand	P44602

Pockets

8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	105	0.52	0.82	18	empty
2	89	0.43	0.79	19	empty
3	132	0.43	0.76	18	empty
4	90	0.40	0.77	15	empty
5	55	0.40	0.81	12	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

4RM6 · Crystal structure of Hemopexin Binding Protein · the same entry in another collection · chain A against A, TM-score 1.00
P44602 · AlphaFold monomer V2.0 prediction for HEME/HEMOPEXIN-binding protein (P44602) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P44602
Elsewhere: RCSB PDB 4RM6 · PDBe 4RM6 · UniProt P44602

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