MolNFT v1 · #105991 · protein

Structure of monoheme cytochrome pcch from geobacter sulfurreducens

4RLR · Cytochrome C, 1 heme-binding site: “Structure of monoheme cytochrome pcch from geobacter sulfurreducens”. X-ray diffraction, 2 ligands (HEM, ZN), 1 pocket (best druggability 0.60). MolNFT v1 #105991 on GenesisL1: 3D structure…

PDB: 4RLR
Type: protein
Length: 126 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C, 1 heme-binding site
UniProt: Q747J2
Ligands: HEM, ZN
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C, 1 heme-binding site	protein	126	52% helix, 2% strand	Q747J2

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
ZN · Zinc ion · metal · 3 copies · chains A
CAC · Cacodylate ion · additive · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	168	0.60	0.83	27	HEM, ZN

Modifications

Observed in the structure: 2 cofactor (heme attachment).

Compared structures

4RLR · Structure of monoheme cytochrome PccH from Geobacter sulfurreducens · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q747J2
Elsewhere: RCSB PDB 4RLR · PDBe 4RLR · UniProt Q747J2

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