MolNFT v1 · #105916 · protein

Structure of a plant specific C2 domain protein, OSGAP1 from rice

4RJ9 · C2 domain-containing protein-like: “Structure of a plant specific C2 domain protein, OSGAP1 from rice”. X-ray diffraction, 1 ligand (K), 1 pocket (best druggability 0.39). MolNFT v1 #105916 on GenesisL1: 3D structure, binding sites…

PDB: 4RJ9
Type: protein
Length: 161 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C2 domain-containing protein-like
EC: 6.5.1.1
UniProt: Q6YWF1
Ligands: K
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	C2 domain-containing protein-like (EC 6.5.1.1)	protein	161	4% helix, 48% strand	Q6YWF1

Ligands and binding sites

K · Potassium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	57	0.39	0.80	18	empty

Compared structures

4RJ9 · Structure of a plant specific C2 domain protein, OsGAP1 from rice · the same entry in another collection · chain A against A, TM-score 1.00
Q6YWF1 · AlphaFold monomer V2.0 prediction for GTPase activating protein 1 (Q6YWF1) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6YWF1
Elsewhere: RCSB PDB 4RJ9 · PDBe 4RJ9 · UniProt Q6YWF1

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