MolNFT v1 · #105899 · protein
Structural analysis of the unmutated ancestor of the HIV-1 envelope V2 region antibody CH58 isolated from an RV144 HIV-1 vaccine efficacy trial vaccinee and associated with decreased transmission risk
4RIS · Envelope glycoprotein: “Structural analysis of the unmutated ancestor of the HIV-1 envelope V2 region antibody CH58 isolated from an…”. X-ray diffraction, 5 pockets (best druggability 0.55). MolNFT v1 #105899 on GenesisL1: 3D…
- PDB
- 4RIS
- Type
- protein
- Length
- 455 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Envelope glycoprotein; CH58-ua Fab heavy chain; CH58-ua Fab light chain
- UniProt
- K7Z4Z0
- Pockets
- 5 · best druggability 0.55
Structure
x-ray diffraction · 3 distinct chains · 10% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| P | Envelope glycoprotein | protein | 14 | 71% helix, 0% strand | K7Z4Z0 |
| H | CH58-ua Fab heavy chain | protein | 228 | 8% helix, 53% strand | — |
| L | CH58-ua Fab light chain | protein | 213 | 8% helix, 51% strand | — |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 402 | 0.55 | 0.73 | 52 | empty |
| 2 | 163 | 0.43 | 0.74 | 25 | empty |
| 3 | 70 | 0.41 | 0.80 | 22 | empty |
| 4 | 57 | 0.36 | 0.79 | 19 | empty |
| 5 | 51 | 0.26 | 0.74 | 19 | empty |
Interfaces
3 interfaces between chains.
- H–L · 1591 Ų buried · 13 hydrogen bonds · protein-protein
- P–H · 598 Ų buried · 8 hydrogen bonds · protein-protein
- P–L · 376 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 4RIS · Structural Analysis of the Unmutated Ancestor of the HIV-1 Envelope V2 Region Antibody… · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K7Z4Z0
- Elsewhere: RCSB PDB 4RIS · PDBe 4RIS · UniProt K7Z4Z0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.