MolNFT v1 · #10584 · protein
Crystal structure of copper amine oxidase from arthrobacter globiformis: holo form generated by biogenesis in crystal.
1IVX: “Crystal structure of copper amine oxidase from arthrobacter globiformis: holo form generated by biogenesis in…”. X-ray diffraction, 1 ligand (CU), 18 pockets (best druggability 0.90). MolNFT v1 #10584 on GenesisL1: 3D structure…
- PDB
- 1IVX
- Type
- protein
- Length
- 1,240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Amine oxidase
- EC
- 1.4.3.6
- UniProt
- P46881
- Ligands
- CU
- Pockets
- 18 · best druggability 0.90
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Amine oxidase (EC 1.4.3.6) | protein | 620 | 12% helix, 42% strand | P46881 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
18 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1089 | 0.90 | 0.91 | 147 | empty |
| 2 | 321 | 0.70 | 0.84 | 51 | empty |
| 3 | 287 | 0.68 | 0.83 | 27 | empty |
| 4 | 312 | 0.66 | 0.81 | 29 | empty |
| 5 | 235 | 0.61 | 0.81 | 39 | empty |
Interfaces
1 interface between chains.
- A–B · 6720 Ų buried · 108 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide, 2 modified (disulfide, nonstandard).
Compared structures
- 1IVX · Crystal structure of copper amine oxidase from Arthrobacter globiformis: Holo form… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46881
- Elsewhere: RCSB PDB 1IVX · PDBe 1IVX · UniProt P46881
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