MolNFT v1 · #105835 · protein

Structural and functional analysis of a low-temperature-active alkaline esterase from south china sea marine sediment microbial metagenomic library

4RGY: “Structural and functional analysis of a low-temperature-active alkaline esterase from south china sea marine…”. X-ray diffraction, 4 pockets (best druggability 0.72). MolNFT v1 #105835 on GenesisL1: 3D structure, binding sites and…

PDB: 4RGY
Type: protein
Length: 473 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Esterase
UniProt: B8Y562
Pockets: 4 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 37% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Esterase	protein	237	38% helix, 24% strand	B8Y562
B	Esterase	protein	236	37% helix, 25% strand	B8Y562

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	160	0.72	0.90	32	empty
2	66	0.68	0.96	20	empty
3	77	0.35	0.76	24	empty
4	62	0.30	0.74	20	empty

Interfaces

1 interface between chains.

A–B · 815 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

4RGY · Structural and functional analysis of a low-temperature-active alkaline esterase from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B8Y562
Elsewhere: RCSB PDB 4RGY · PDBe 4RGY · UniProt B8Y562

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