MolNFT v1 · #105822 · protein

Crystal structure of a fic family protein (DDE_2494) from desulfovibrio desulfuricans G20 at 2.70 a resolution

4RGL · Filamentation induced by camp protein fic: “Crystal structure of a fic family protein (DDE_2494) from desulfovibrio desulfuricans G20 at 2.70 a resolution”. X-ray diffraction, 1 ligand (UNL), 3 pockets (best druggability 0.50).…

PDB: 4RGL
Type: protein
Length: 325 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Filamentation induced by camp protein fic
UniProt: Q30YF5
Ligands: UNL
Pockets: 3 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 60% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Filamentation induced by camp protein fic	protein	325	60% helix, 4% strand	Q30YF5

Ligands and binding sites

UNL · Unknown ligand · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	154	0.50	0.79	30	UNL
2	80	0.44	0.80	20	empty
3	57	0.28	0.74	13	empty

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

4RGL · Crystal structure of a Fic family protein (Dde_2494) from Desulfovibrio desulfuricans G20… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q30YF5
Elsewhere: RCSB PDB 4RGL · PDBe 4RGL · UniProt Q30YF5

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