MolNFT v1 · #105713 · protein
Crystal structure of an immunoreactive 32 kda antigen PG49 (PG_0181) from porphyromonas gingivalis W83 at 1.45 a resolution (psi community target, nakayama)
4RDB: “Crystal structure of an immunoreactive 32 kda antigen PG49 (PG_0181) from porphyromonas gingivalis W83 at…”. X-ray diffraction, 1 ligand (ACN), 2 pockets (best druggability 0.32). MolNFT v1 #105713 on GenesisL1: 3D structure…
- PDB
- 4RDB
- Type
- protein
- Length
- 303 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Immunoreactive 32 kda antigen PG49
- UniProt
- Q7MXK0
- Ligands
- ACN
- Pockets
- 2 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Immunoreactive 32 kda antigen PG49 | protein | 303 | 12% helix, 45% strand | Q7MXK0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.32 | 0.74 | 18 | EDO, ACN |
| 2 | 61 | 0.25 | 0.72 | 11 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 4RDB · Crystal structure of an immunoreactive 32 kDa antigen PG49 (PG_0181) from Porphyromonas… · the same entry in another collection · chain A against A, TM-score 1.00
- Q7MXK0 · AlphaFold monomer V2.0 prediction for minor fimbrium tip subunit MFA4 (Q7MXK0) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7MXK0
- Elsewhere: RCSB PDB 4RDB · PDBe 4RDB · UniProt Q7MXK0
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