MolNFT v1 · #105709 · protein
The crystal structure of a cupin 2 conserved barrel domain protein from salinispora arenicola cns-205
4RD7: “The crystal structure of a cupin 2 conserved barrel domain protein from salinispora arenicola cns-205”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.56). MolNFT v1 #105709 on GenesisL1: 3D structure, binding…
- PDB
- 4RD7
- Type
- protein
- Length
- 119 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cupin 2 conserved barrel domain protein
- UniProt
- A8M0K5
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cupin 2 conserved barrel domain protein | protein | 119 | 10% helix, 43% strand | A8M0K5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.56 | 0.86 | 16 | GOL |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 4RD7 · The crystal structure of a Cupin 2 conserved barrel domain protein from Salinispora… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8M0K5
- Elsewhere: RCSB PDB 4RD7 · PDBe 4RD7 · UniProt A8M0K5
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