MolNFT v1 · #105689 · protein
Crystal structure of uncharacterized membrane spanning protein from vibrio fischeri
4RCK · Hypothetical membrane spanning protein: “Crystal structure of uncharacterized membrane spanning protein from vibrio fischeri”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.35). MolNFT v1 #105689 on GenesisL1: 3D…
- PDB
- 4RCK
- Type
- protein
- Length
- 406 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical membrane spanning protein
- UniProt
- Q5DZP5
- Ligands
- MG
- Pockets
- 2 · best druggability 0.35
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical membrane spanning protein | protein | 204 | 37% helix, 28% strand | Q5DZP5 |
| B | Hypothetical membrane spanning protein | protein | 202 | 38% helix, 27% strand | Q5DZP5 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.35 | 0.76 | 12 | empty |
| 2 | 60 | 0.29 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 3923 Ų buried · 72 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 4RCK · Crystal Structure of Uncharacterized Membrane Spanning Protein from Vibrio fischeri · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5DZP5
- Elsewhere: RCSB PDB 4RCK · PDBe 4RCK · UniProt Q5DZP5
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