MolNFT v1 · #105524 · protein
Crystal structure of a hypothetical protein (PARMER_01801) from parabacteroides merdae atcc 43184 at 2.30 a resolution
4R7F · Uncharacterized protein: “Crystal structure of a hypothetical protein (PARMER_01801) from parabacteroides merdae atcc 43184 at 2.30 a…”. X-ray diffraction, 2 ligands (MG, CL), 3 pockets (best druggability 0.77). MolNFT v1 #105524 on…
- PDB
- 4R7F
- Type
- protein
- Length
- 397 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A7AEG3
- Ligands
- MG, CL
- Pockets
- 3 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 397 | 5% helix, 46% strand | A7AEG3 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 436 | 0.77 | 0.86 | 51 | TRS |
| 2 | 157 | 0.61 | 0.84 | 26 | empty |
| 3 | 66 | 0.28 | 0.73 | 19 | empty |
Modifications
Observed in the structure: 7 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 4R7F · Crystal structure of a hypothetical protein (PARMER_01801) from Parabacteroides merdae… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7AEG3
- Elsewhere: RCSB PDB 4R7F · PDBe 4R7F · UniProt A7AEG3
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