MolNFT v1 · #105490 · protein
Crystal structure of putative binding protein msme from bacillus subtilis subsp. subtilis str. 168, target efi-510764, an open conformation
4R6H · Solute binding protein msme: “Crystal structure of putative binding protein msme from bacillus subtilis subsp. subtilis str. 168, target…”. X-ray diffraction, 1 ligand (CL), 4 pockets (best druggability 0.68). MolNFT v1 #105490 on…
- PDB
- 4R6H
- Type
- protein
- Length
- 394 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Solute binding protein msme
- UniProt
- O34335
- Ligands
- CL
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Solute binding protein msme | protein | 394 | 50% helix, 15% strand | O34335 |
Ligands and binding sites
- CL · Chloride ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 615 | 0.68 | 0.77 | 56 | CL |
| 2 | 89 | 0.53 | 0.84 | 16 | CL |
| 3 | 91 | 0.45 | 0.80 | 21 | empty |
| 4 | 97 | 0.35 | 0.74 | 23 | CL |
Compared structures
- 4R6H · Crystal structure of putative binding protein msme from bacillus subtilis subsp. subtilis… · the same entry in another collection · chain A against A, TM-score 1.00
- O34335 · AlphaFold monomer V2.0 prediction for MELIBIOSE/RAFFINOSE/STACHYOSE- binding protein mele… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34335
- Elsewhere: RCSB PDB 4R6H · PDBe 4R6H · UniProt O34335
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.