MolNFT v1 · #105427 · RNA
Crystal structure of the vs ribozyme-A756G mutant
4R4P · Vs ribozyme RNA: “Crystal structure of the vs ribozyme-A756G mutant”. X-ray diffraction, 1 ligand (MG), 5 pockets (best druggability 0.68). MolNFT v1 #105427 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4R4P
- Type
- RNA
- Length
- 186 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vs ribozyme RNA
- Ligands
- MG
- Pockets
- 5 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vs ribozyme RNA | rna | 186 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1011 | 0.68 | 0.74 | 53 | MG |
| 2 | 888 | 0.67 | 0.75 | 46 | empty |
| 3 | 461 | 0.59 | 0.75 | 26 | empty |
| 4 | 428 | 0.55 | 0.74 | 24 | empty |
| 5 | 83 | 0.28 | 0.72 | 12 | empty |
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 4R4P · Crystal Structure of the VS ribozyme-A756G mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4R4P · PDBe 4R4P
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