MolNFT v1 · #105344 · protein

Structure of B. subtilis glnk

4R25 · Nitrogen regulatory pii-like protein: “Structure of B. subtilis glnk”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.35). MolNFT v1 #105344 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4R25
Type: protein
Length: 114 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nitrogen regulatory pii-like protein
UniProt: Q07428
Ligands: ZN
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nitrogen regulatory pii-like protein	protein	114	23% helix, 40% strand	Q07428

Ligands and binding sites

ZN · Zinc ion · metal · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.35	0.77	16	empty

Compared structures

4R25 · Structure of B. subtilis GlnK · the same entry in another collection · chain A against A, TM-score 1.00
Q07428 · AlphaFold monomer V2.0 prediction for nitrogen regulatory pii-like protein (Q07428) · a predicted model of the same protein · chain A against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q07428
Elsewhere: RCSB PDB 4R25 · PDBe 4R25 · UniProt Q07428

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