MolNFT v1 · #105064 · protein + DNA
Complex of wopr domain of WOR1 in candida albicans with the 17BP dsdna
4QTK · White-opaque regulator 1: “Complex of wopr domain of WOR1 in candida albicans with the 17BP dsdna”. X-ray diffraction, 10 pockets (best druggability 0.61). MolNFT v1 #105064 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4QTK
- Type
- protein + DNA
- Length
- 361 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- White-opaque regulator 1; DNA (5'- D(*TP*CP*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*AP*AP*CP*TP*T)-3…
- UniProt
- Q5AP80
- Pockets
- 10 · best druggability 0.61
Structure
x-ray diffraction · 4 distinct chains · 25% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | White-opaque regulator 1 | protein | 145 | 24% helix, 23% strand | Q5AP80 |
| B | White-opaque regulator 1 | protein | 148 | 26% helix, 24% strand | Q5AP80 |
| C, E | DNA (5'- D(*TP*CP*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*AP*AP*CP*TP*T)-3') | dna | 17 | — | — |
| D, F | DNA (5'- D(*AP*AP*GP*TP*TP*AP*AP*AP*CP*TP*TP*TP*TP*TP*TP*GP*A)-3') | dna | 17 | — | — |
Pockets
10 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.61 | 0.91 | 18 | empty |
| 2 | 67 | 0.45 | 0.83 | 18 | empty |
| 3 | 73 | 0.44 | 0.82 | 18 | empty |
| 4 | 86 | 0.39 | 0.77 | 20 | empty |
| 5 | 126 | 0.38 | 0.74 | 17 | empty |
Interfaces
7 interfaces between chains.
- E–F · 764 Ų buried · 66 hydrogen bonds · nucleic-nucleic
- C–D · 756 Ų buried · 62 hydrogen bonds · nucleic-nucleic
- A–D · 427 Ų buried · 7 hydrogen bonds · protein-nucleic
- B–F · 419 Ų buried · 5 hydrogen bonds · protein-nucleic
- A–C · 389 Ų buried · 15 hydrogen bonds · protein-nucleic
Compared structures
- 4QTK · Complex of WOPR domain of Wor1 in Candida albicans with the 17bp dsDNA · the same entry in another collection · chain F against F, TM-score 1.00
- Q5AP80 · AlphaFold monomer V2.0 prediction for white-opaque regulator 1 (Q5AP80) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5AP80
- Elsewhere: RCSB PDB 4QTK · PDBe 4QTK · UniProt Q5AP80
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.