MolNFT v1 · #105024 · protein

Crystal structure of ATU4361 sugar transporter from agrobacterium fabrum C58, target efi-510558, with bound glycerol

4QSE · ABC-type sugar transporter: “Crystal structure of ATU4361 sugar transporter from agrobacterium fabrum C58, target efi-510558, with bound…”. X-ray diffraction, 8 pockets (best druggability 0.75). MolNFT v1 #105024 on GenesisL1: 3D…

PDB: 4QSE
Type: protein
Length: 764 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ABC-type sugar transporter
UniProt: A9CGI0
Pockets: 8 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	ABC-type sugar transporter	protein	382	49% helix, 17% strand	A9CGI0

Ligands and binding sites

GOL · Glycerol · additive · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	772	0.75	0.80	73	empty
2	247	0.73	0.88	27	GOL
3	172	0.71	0.89	27	GOL
4	116	0.49	0.80	20	empty
5	119	0.48	0.78	20	empty

Interfaces

1 interface between chains.

A–B · 520 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

4QSE · Crystal structure of ATU4361 sugar transporter from Agrobacterium Fabrum c58, target… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A9CGI0
Elsewhere: RCSB PDB 4QSE · PDBe 4QSE · UniProt A9CGI0

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