MolNFT v1 · #104954 · protein
Crystal structure of pneumolysin from streptococcus pneumoniae
4QQA: “Crystal structure of pneumolysin from streptococcus pneumoniae”. X-ray diffraction, 3 pockets (best druggability 0.65). MolNFT v1 #104954 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4QQA
- Type
- protein
- Length
- 483 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pneumolysin
- UniProt
- Q2XU26
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pneumolysin | protein | 483 | 18% helix, 41% strand | Q2XU26 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 223 | 0.65 | 0.83 | 37 | empty |
| 2 | 102 | 0.47 | 0.80 | 19 | empty |
| 3 | 51 | 0.41 | 0.82 | 17 | empty |
Compared structures
- 4QQA · Crystal structure of pneumolysin from Streptococcus pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2XU26
- Elsewhere: RCSB PDB 4QQA · PDBe 4QQA · UniProt Q2XU26
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