MolNFT v1 · #10490 · protein

Solution structures of ferrocytochrome C3 from desulfovibrio vulgaris miyazaki F

1IT1: “Solution structures of ferrocytochrome C3 from desulfovibrio vulgaris miyazaki F”. Solution nmr, 1 ligand (HEC), 1 pocket (best druggability 0.76). MolNFT v1 #10490 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1IT1
Type: protein
Length: 107 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C3
UniProt: P00132
Ligands: HEC
Pockets: 1 · best druggability 0.76

Structure

solution nmr · 1 distinct chain · 25% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C3	protein	107	25% helix, 9% strand	P00132

Ligands and binding sites

HEC · Heme C · ligand · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	454	0.76	0.85	61	HEC

Modifications

Observed in the structure: 8 cofactor (heme c attachment).

Compared structures

1IT1 · Solution structures of ferrocytochrome c3 from Desulfovibrio vulgaris Miyazaki F · the same entry in another collection · chain A against A, TM-score 1.00
P00132 · AlphaFold monomer V2.0 prediction for cytochrome C3 (P00132) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00132
Elsewhere: RCSB PDB 1IT1 · PDBe 1IT1 · UniProt P00132

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