MolNFT v1 · #104820 · protein
Crystal structure of a putative cysteine dioxygenase from bacillus subtilis with cys-bound
4QM9: “Crystal structure of a putative cysteine dioxygenase from bacillus subtilis with cys-bound”. X-ray diffraction, 2 ligands (CYS, FE), 3 pockets (best druggability 0.39). MolNFT v1 #104820 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4QM9
- Type
- protein
- Length
- 306 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cysteine dioxygenase
- EC
- 1.13.11.20
- UniProt
- O32085
- Ligands
- CYS, FE
- Pockets
- 3 · best druggability 0.39
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cysteine dioxygenase (EC 1.13.11.20) | protein | 154 | 16% helix, 41% strand | O32085 |
| B | Cysteine dioxygenase (EC 1.13.11.20) | protein | 152 | 17% helix, 39% strand | O32085 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.39 | 0.78 | 19 | empty |
| 2 | 93 | 0.36 | 0.75 | 22 | empty |
| 3 | 78 | 0.35 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 486 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4QM9 · Crystal Structure of a Putative Cysteine Dioxygenase From Bacillus subtilis with Cys-bound · the same entry in another collection · chain B against B, TM-score 1.00
- O32085 · AlphaFold monomer V2.0 prediction for cysteine dioxygenase (O32085) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O32085
- Elsewhere: RCSB PDB 4QM9 · PDBe 4QM9 · UniProt O32085
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.