MolNFT v1 · #104786 · protein

Structure of C. trachomatis CT441

4QL6 · Carboxy-terminal processing protease: “Structure of C. trachomatis CT441”. X-ray diffraction, 17 pockets (best druggability 0.72). MolNFT v1 #104786 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4QL6
Type: protein
Length: 1,487 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Carboxy-terminal processing protease
EC: 3.4.21.-
UniProt: B0B813
Pockets: 17 · best druggability 0.72

Structure

x-ray diffraction · 3 distinct chains · 43% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Carboxy-terminal processing protease (EC 3.4.21.-)	protein	489	41% helix, 16% strand	B0B813
B	Carboxy-terminal processing protease (EC 3.4.21.-)	protein	509	45% helix, 15% strand	B0B813
C	Carboxy-terminal processing protease (EC 3.4.21.-)	protein	489	42% helix, 14% strand	B0B813

Pockets

17 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	373	0.72	0.84	56	empty
2	271	0.53	0.75	40	empty
3	204	0.52	0.77	25	empty
4	141	0.49	0.78	17	empty
5	63	0.46	0.83	14	empty

Interfaces

2 interfaces between chains.

A–C · 1380 Å² buried · 28 hydrogen bonds · protein-protein
B–C · 468 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

4QL6 · Structure of C. trachomatis CT441 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B0B813
Elsewhere: RCSB PDB 4QL6 · PDBe 4QL6 · UniProt B0B813

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