MolNFT v1 · #104763 · protein

Monomeric form of human LLT1, a ligand for nkr-P1

4QKG · C-type lectin domain family 2 member D: “Monomeric form of human LLT1, a ligand for nkr-P1”. X-ray diffraction, 2 ligands (NAG, SO4). MolNFT v1 #104763 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4QKG
Type: protein
Length: 108 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C-type lectin domain family 2 member D
UniProt: Q9UHP7
Ligands: NAG, SO4

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	C-type lectin domain family 2 member D	protein	108	18% helix, 39% strand	Q9UHP7

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide, 1 glycan (disulfide, N-glycosylation).

Compared structures

4QKG · Monomeric form of human LLT1, a ligand for NKR-P1 · the same entry in another collection · chain A against A, TM-score 1.00
Q9UHP7 · AlphaFold monomer V2.0 prediction for C-type lectin domain family 2 member D (Q9UHP7) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UHP7
Elsewhere: RCSB PDB 4QKG · PDBe 4QKG · UniProt Q9UHP7

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