MolNFT v1 · #104570 · protein
Crystal structure of the complex of phospholipase A2 with resveratrol at 1.20 a resolution
4QER · Phospholipase A2 vrv-pl-viiia: “Crystal structure of the complex of phospholipase A2 with resveratrol at 1.20 a resolution”. X-ray diffraction, 2 ligands (STL, SO4), 1 pocket (best druggability 0.51). MolNFT v1 #104570 on GenesisL1…
- PDB
- 4QER
- Type
- protein
- Length
- 121 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase A2 vrv-pl-viiia
- EC
- 3.1.1.4
- UniProt
- D0VX11
- Ligands
- STL, SO4
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase A2 vrv-pl-viiia (EC 3.1.1.4) | protein | 121 | 48% helix, 8% strand | D0VX11 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 152 | 0.51 | 0.79 | 21 | STL |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 4QER · Crystal Structure of the Complex of Phospholipase A2 with Resveratrol at 1.20 A Resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0VX11
- Elsewhere: RCSB PDB 4QER · PDBe 4QER · UniProt D0VX11
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