MolNFT v1 · #104501 · protein
Structural annotation of pathogenic bovine parvovirus-1
4QC8 · VP2: “Structural annotation of pathogenic bovine parvovirus-1”. X-ray diffraction, 4 pockets (best druggability 0.62). MolNFT v1 #104501 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4QC8
- Type
- protein
- Length
- 498 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP2
- UniProt
- Q2LD55
- Pockets
- 4 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP2 | protein | 498 | 8% helix, 28% strand | Q2LD55 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 641 | 0.62 | 0.73 | 57 | empty |
| 2 | 268 | 0.56 | 0.77 | 33 | empty |
| 3 | 77 | 0.43 | 0.80 | 20 | empty |
| 4 | 70 | 0.32 | 0.75 | 23 | empty |
Compared structures
- 4QC8 · Structural annotation of pathogenic bovine Parvovirus-1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2LD55
- Elsewhere: RCSB PDB 4QC8 · PDBe 4QC8 · UniProt Q2LD55
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