MolNFT v1 · #104433 · protein

Crystal structure of lprf from mycobacterium bovis

4QA8 · Putative lipoprotein lprf: “Crystal structure of lprf from mycobacterium bovis”. X-ray diffraction, 1 ligand (PJZ), 1 pocket (best druggability 0.74). MolNFT v1 #104433 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4QA8
Type: protein
Length: 210 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative lipoprotein lprf
UniProt: P65315
Ligands: PJZ
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative lipoprotein lprf	protein	210	15% helix, 45% strand	P65315

Ligands and binding sites

PJZ · (2R)-2-(dodecanoyloxy)propyl (4E,6E,8E,10E,12E)-pentadeca-4,6,8,10,12-pentaenoate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	255	0.74	0.87	31	PJZ

Compared structures

4QA8 · Crystal structure of LprF from Mycobacterium bovis · the same entry in another collection · chain A against A, TM-score 1.00
P65315 · AlphaFold monomer V2.0 prediction for putative diacylated glycolipid transporter lprf… · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P65315
Elsewhere: RCSB PDB 4QA8 · PDBe 4QA8 · UniProt P65315

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