MolNFT v1 · #104399 · protein

Crystal structure of a putative gdsl-like lipase (PARMER_00689) from parabacteroides merdae atcc 43184 at 2.86 a resolution

4Q9A · Tat pathway signal sequence domain protein: “Crystal structure of a putative gdsl-like lipase (PARMER_00689) from parabacteroides merdae atcc 43184 at…”. X-ray diffraction, 3 pockets (best druggability 0.33). MolNFT v1 #104399 on…

PDB: 4Q9A
Type: protein
Length: 437 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tat pathway signal sequence domain protein
UniProt: A7ABD4
Pockets: 3 · best druggability 0.33

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tat pathway signal sequence domain protein	protein	219	46% helix, 11% strand	A7ABD4
B	Tat pathway signal sequence domain protein	protein	218	47% helix, 11% strand	A7ABD4

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.33	0.75	19	empty
2	72	0.30	0.74	17	empty
3	60	0.26	0.72	14	empty

Interfaces

1 interface between chains.

A–B · 1075 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 12 modified (engineered, phosphorylation).

Compared structures

4Q9A · Crystal structure of a putative GDSL-like lipase (PARMER_00689) from Parabacteroides… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7ABD4
Elsewhere: RCSB PDB 4Q9A · PDBe 4Q9A · UniProt A7ABD4

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