MolNFT v1 · #104317 · protein

Structure of phospholipase D BETA1B1I from sicarius terrosus venom at 2.14 a resolution

4Q6X · Phospholipase D stsictox-BETAIC1: “Structure of phospholipase D BETA1B1I from sicarius terrosus venom at 2.14 a resolution”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.55). MolNFT v1 #104317 on GenesisL1: 3D…

PDB: 4Q6X
Type: protein
Length: 278 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phospholipase D stsictox-BETAIC1
EC: 4.6.1.17
Ligands: MG
Pockets: 2 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phospholipase D stsictox-BETAIC1 (EC 4.6.1.17)	protein	278	38% helix, 21% strand	—

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	145	0.55	0.81	32	MG
2	89	0.42	0.79	20	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

4Q6X · Structure of phospholipase D Beta1B1i from Sicarius terrosus venom at 2.14 A resolution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4Q6X · PDBe 4Q6X

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