MolNFT v1 · #104243 · protein

Crystal structure of an ATP synthase subunit beta 1 (F1-B1) from burkholderia thailandensis

4Q4L: “Crystal structure of an ATP synthase subunit beta 1 (F1-B1) from burkholderia thailandensis”. X-ray diffraction, 1 ligand (NA), 8 pockets (best druggability 0.63). MolNFT v1 #104243 on GenesisL1: 3D structure, binding sites and…

PDB: 4Q4L
Type: protein
Length: 436 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ATP synthase subunit beta 1
EC: 3.6.3.14
UniProt: Q2STE9
Ligands: NA
Pockets: 8 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ATP synthase subunit beta 1 (EC 3.6.3.14)	protein	436	36% helix, 22% strand	Q2STE9

Ligands and binding sites

NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.63	0.89	18	empty
2	138	0.50	0.79	23	empty
3	93	0.43	0.78	17	empty
4	93	0.38	0.76	18	empty
5	73	0.38	0.78	20	empty

Compared structures

4Q4L · Crystal structure of an ATP synthase subunit beta 1 (F1-B1) from Burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00
Q2STE9 · AlphaFold monomer V2.0 prediction for ATP synthase subunit beta 1 (Q2STE9) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2STE9
Elsewhere: RCSB PDB 4Q4L · PDBe 4Q4L · UniProt Q2STE9

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