MolNFT v1 · #104069 · protein

Substrate-free structure of D-alanine carrier protein ligase dlta from bacillus cereus

4PZP · D-alanine--POLY(PHOSPHORIBITOL) ligase subunit 1: “Substrate-free structure of D-alanine carrier protein ligase dlta from bacillus cereus”. X-ray diffraction, 3 pockets (best druggability 0.67). MolNFT v1 #104069 on GenesisL1: 3D…

PDB: 4PZP
Type: protein
Length: 464 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: D-alanine--POLY(PHOSPHORIBITOL) ligase subunit 1
EC: 6.1.1.13
UniProt: Q81G39
Pockets: 3 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	D-alanine--POLY(PHOSPHORIBITOL) ligase subunit 1 (EC 6.1.1.13)	protein	464	34% helix, 26% strand	Q81G39

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	608	0.67	0.76	65	empty
2	61	0.39	0.80	18	empty
3	86	0.37	0.76	15	empty

Compared structures

4PZP · Substrate-free structure of D-alanine carrier protein ligase DltA from Bacillus cereus · the same entry in another collection · chain A against A, TM-score 1.00
Q81G39 · AlphaFold monomer V2.0 prediction for D-alanine--D-alanyl carrier protein ligase (Q81G39) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q81G39
Elsewhere: RCSB PDB 4PZP · PDBe 4PZP · UniProt Q81G39

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