MolNFT v1 · #104051 · protein
Crystal structure of the second and third fibronectin F1 modules in complex with a fragment of BBK32 from borrelia burgdorferi
4PZ5: “Crystal structure of the second and third fibronectin F1 modules in complex with a fragment of BBK32 from…”. X-ray diffraction, 1 ligand (ACE). MolNFT v1 #104051 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4PZ5
- Type
- protein
- Length
- 103 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fibronectin; Fibronectin-binding protein BBK32
- UniProt
- P02751, O50835
- Ligands
- ACE
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fibronectin | protein | 89 | 0% helix, 57% strand | P02751 |
| B | Fibronectin-binding protein BBK32 | protein | 14 | 0% helix, 29% strand | O50835 |
Ligands and binding sites
- ACE · Acetyl group · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 567 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide, 1 covalent (disulfide, covalent ligand).
Compared structures
- 4PZ5 · Crystal structure of the second and third fibronectin F1 modules in complex with a… · the same entry in another collection · chain A against A, TM-score 1.00
- P02751 · AlphaFold monomer V2.0 prediction for fibronectin (P02751) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02751
- Every structure of UniProt O50835
- Elsewhere: RCSB PDB 4PZ5 · PDBe 4PZ5 · UniProt P02751 · UniProt O50835
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