MolNFT v1 · #103972 · protein

Crystal structure of dsba from the gram positive bacterium corynebacterium diphtheriae

4PWP: “Crystal structure of dsba from the gram positive bacterium corynebacterium diphtheriae”. X-ray diffraction, 2 pockets (best druggability 0.36). MolNFT v1 #103972 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4PWP
Type: protein
Length: 250 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dsba
Pockets: 2 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dsba	protein	250	42% helix, 10% strand	—

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	66	0.36	0.78	15	empty
2	86	0.36	0.76	25	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

4PWP · Crystal structure of DsbA from the Gram positive bacterium Corynebacterium diphtheriae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4PWP · PDBe 4PWP

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.