MolNFT v1 · #103889 · protein
Crystal structure of a susd homolog (BACUNI_02643) from bacteroides uniformis atcc 8492 at 2.00 a resolution
4PUC: “Crystal structure of a susd homolog (BACUNI_02643) from bacteroides uniformis atcc 8492 at 2.00 a resolution”. X-ray diffraction, 1 ligand (ZN), 10 pockets (best druggability 0.73). MolNFT v1 #103889 on GenesisL1: 3D structure…
- PDB
- 4PUC
- Type
- protein
- Length
- 980 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Susd homolog
- UniProt
- A7V4Y5
- Ligands
- ZN
- Pockets
- 10 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 50% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Susd homolog | protein | 488 | 50% helix, 5% strand | A7V4Y5 |
| B | Susd homolog | protein | 492 | 50% helix, 5% strand | A7V4Y5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 417 | 0.73 | 0.83 | 40 | empty |
| 2 | 55 | 0.69 | 0.97 | 22 | empty |
| 3 | 176 | 0.59 | 0.82 | 26 | empty |
| 4 | 182 | 0.59 | 0.81 | 28 | empty |
| 5 | 185 | 0.49 | 0.76 | 26 | ZN, ACT |
Interfaces
1 interface between chains.
- A–B · 908 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
- 4PUC · Crystal structure of a SusD homolog (BACUNI_02643) from Bacteroides uniformis ATCC 8492… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7V4Y5
- Elsewhere: RCSB PDB 4PUC · PDBe 4PUC · UniProt A7V4Y5
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