MolNFT v1 · #103851 · protein
Myxococcus xanthus encapsulin protein (enca)
4PT2: “Myxococcus xanthus encapsulin protein (enca)”. Electron microscopy, 12 pockets (best druggability 0.74). MolNFT v1 #103851 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4PT2
- Type
- protein
- Length
- 831 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Encapsulin protein
- UniProt
- Q1D6H4
- Pockets
- 12 · best druggability 0.74
Structure
electron microscopy · 1 distinct chain · 26% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| P, A, B | Encapsulin protein | protein | 277 | 26% helix, 16% strand | Q1D6H4 |
Pockets
12 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.74 | 0.98 | 22 | empty |
| 2 | 526 | 0.73 | 0.81 | 59 | empty |
| 3 | 363 | 0.68 | 0.81 | 45 | empty |
| 4 | 375 | 0.64 | 0.78 | 42 | empty |
| 5 | 208 | 0.54 | 0.78 | 40 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1668 Ų buried · 14 hydrogen bonds · protein-protein
- P–A · 657 Ų buried · 5 hydrogen bonds · protein-protein
- P–B · 309 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4PT2 · Myxococcus xanthus encapsulin protein (EncA) · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1D6H4
- Elsewhere: RCSB PDB 4PT2 · PDBe 4PT2 · UniProt Q1D6H4
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