MolNFT v1 · #103825 · protein

Mycobacterium tuberculosis reca glycerol bound low temperature structure iic-N1

4PSA · Protein reca, 1ST part, 2ND part: “Mycobacterium tuberculosis reca glycerol bound low temperature structure iic-N1”. X-ray diffraction, 1 ligand (NA), 4 pockets (best druggability 0.50). MolNFT v1 #103825 on GenesisL1: 3D structure…

PDB: 4PSA
Type: protein
Length: 310 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein reca, 1ST part, 2ND part
EC: 3.1.-.-
UniProt: P0A5U4
Ligands: NA
Pockets: 4 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein reca, 1ST part, 2ND part (EC 3.1.-.-)	protein	310	40% helix, 25% strand	P0A5U4

Ligands and binding sites

NA · Sodium ion · metal · chains A
EDO · 1,2-ethanediol · additive · 7 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	164	0.50	0.78	25	NA, GOL
2	117	0.41	0.76	33	EDO
3	62	0.31	0.75	17	empty
4	62	0.26	0.73	24	EDO

Compared structures

4PSA · Mycobacterium tuberculosis RecA glycerol bound low temperature structure IIC-N1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A5U4
Elsewhere: RCSB PDB 4PSA · PDBe 4PSA · UniProt P0A5U4

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