MolNFT v1 · #103808 · protein
Structure of apo argbp from T. maritima
4PRS · ABC-type transporter, periplasmic subunit family 3: “Structure of apo argbp from T. maritima”. X-ray diffraction, 3 pockets (best druggability 0.66). MolNFT v1 #103808 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4PRS
- Type
- protein
- Length
- 453 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ABC-type transporter, periplasmic subunit family 3
- UniProt
- Q9WZ62
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ABC-type transporter, periplasmic subunit family 3 | protein | 226 | 38% helix, 27% strand | Q9WZ62 |
| B | ABC-type transporter, periplasmic subunit family 3 | protein | 227 | 37% helix, 23% strand | Q9WZ62 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 644 | 0.66 | 0.75 | 53 | empty |
| 2 | 179 | 0.45 | 0.74 | 27 | empty |
| 3 | 80 | 0.30 | 0.72 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1543 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 4PRS · Structure of apo ArgBP from T. maritima · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WZ62
- Elsewhere: RCSB PDB 4PRS · PDBe 4PRS · UniProt Q9WZ62
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