MolNFT v1 · #103782 · protein
Mycobacterium tuberculosis reca glycerol bound low temperature structure iic-N4
4PQY · Protein reca, 1ST part, 2ND part: “Mycobacterium tuberculosis reca glycerol bound low temperature structure iic-N4”. X-ray diffraction, 4 pockets (best druggability 0.54). MolNFT v1 #103782 on GenesisL1: 3D structure, binding sites…
- PDB
- 4PQY
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein reca, 1ST part, 2ND part
- EC
- 3.1.-.-
- UniProt
- P0A5U4
- Pockets
- 4 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein reca, 1ST part, 2ND part (EC 3.1.-.-) | protein | 316 | 40% helix, 23% strand | P0A5U4 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 194 | 0.54 | 0.79 | 27 | GOL |
| 2 | 88 | 0.39 | 0.77 | 26 | empty |
| 3 | 86 | 0.33 | 0.74 | 21 | empty |
| 4 | 60 | 0.28 | 0.73 | 20 | empty |
Compared structures
- 4PQY · Mycobacterium tuberculosis RecA glycerol bound low temperature structure IIC-N4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A5U4
- Elsewhere: RCSB PDB 4PQY · PDBe 4PQY · UniProt P0A5U4
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