MolNFT v1 · #103750 · protein

Crystal structure of ATCM1 with phenylalanine bound in allosteric site

4PPV · Chorismate mutase 1, chloroplastic: “Crystal structure of ATCM1 with phenylalanine bound in allosteric site”. X-ray diffraction, 1 ligand (PHE), 4 pockets (best druggability 0.52). MolNFT v1 #103750 on GenesisL1: 3D structure…

PDB: 4PPV
Type: protein
Length: 246 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chorismate mutase 1, chloroplastic
EC: 5.4.99.5
UniProt: P42738
Ligands: PHE
Pockets: 4 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 64% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Chorismate mutase 1, chloroplastic (EC 5.4.99.5)	protein	246	64% helix, 2% strand	P42738

Ligands and binding sites

PHE · Phenylalanine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	182	0.52	0.78	24	empty
2	79	0.35	0.75	21	empty
3	50	0.28	0.75	13	empty
4	56	0.27	0.74	21	PHE

Compared structures

4PPV · Crystal Structure of AtCM1 with Phenylalanine Bound in Allosteric Site · the same entry in another collection · chain A against A, TM-score 1.00
P42738 · AlphaFold monomer V2.0 prediction for chorismate mutase 1, chloroplastic (P42738) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P42738
Elsewhere: RCSB PDB 4PPV · PDBe 4PPV · UniProt P42738

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