MolNFT v1 · #103703 · protein

Crystal structure of a putative periplasmic protein (BACCAC_02096) from bacteroides caccae atcc 43185 at 2.30 a resolution

4POI: “Crystal structure of a putative periplasmic protein (BACCAC_02096) from bacteroides caccae atcc 43185 at 2.30…”. X-ray diffraction, 3 pockets (best druggability 0.59). MolNFT v1 #103703 on GenesisL1: 3D structure, binding sites and…

PDB: 4POI
Type: protein
Length: 236 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative periplasmic protein
UniProt: A5ZGS7
Pockets: 3 · best druggability 0.59

Structure

x-ray diffraction · 2 distinct chains · 16% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative periplasmic protein	protein	116	16% helix, 36% strand	A5ZGS7
B	Putative periplasmic protein	protein	120	16% helix, 35% strand	A5ZGS7

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	177	0.59	0.82	27	empty
2	94	0.44	0.79	18	empty
3	53	0.31	0.76	12	empty

Interfaces

1 interface between chains.

A–B · 425 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

4POI · Crystal structure of a putative periplasmic protein (BACCAC_02096) from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5ZGS7
Elsewhere: RCSB PDB 4POI · PDBe 4POI · UniProt A5ZGS7

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