MolNFT v1 · #103689 · protein

Crystal structure of lampetra planeri vlrc

4PO4: “Crystal structure of lampetra planeri vlrc”. X-ray diffraction, 1 pocket (best druggability 0.74). MolNFT v1 #103689 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4PO4
Type: protein
Length: 442 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lampetra planeri vlrc
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Lampetra planeri vlrc	protein	221	9% helix, 15% strand	—

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	838	0.74	0.78	69	empty

Interfaces

1 interface between chains.

A–B · 296 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

4PO4 · Crystal Structure of Lampetra planeri VLRC · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4PO4 · PDBe 4PO4

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