MolNFT v1 · #103661 · protein
E. COLI methionine aminopeptidase in complex with inhibitor 7-methoxy- 2-methylen-3,4-dihydronaphthalen-1(2H)-one
4PNC: “E. COLI methionine aminopeptidase in complex with inhibitor 7-methoxy…”. X-ray diffraction, 3 ligands (7NP, CO, NA), 3 pockets (best druggability 0.60). MolNFT v1 #103661 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4PNC
- Type
- protein
- Length
- 262 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methionine aminopeptidase
- EC
- 3.4.11.18
- UniProt
- C3TPN7
- Ligands
- 7NP, CO, NA
- Pockets
- 3 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methionine aminopeptidase (EC 3.4.11.18) | protein | 262 | 28% helix, 28% strand | C3TPN7 |
Ligands and binding sites
- 7NP · (2S)-7-methoxy-2-methyl-3,4-dihydronaphthalen-1(2H)-one · ligand · chains A
- CO · Cobalt (II) ion · metal · 3 copies · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 155 | 0.60 | 0.83 | 26 | 7NP |
| 2 | 68 | 0.33 | 0.76 | 19 | empty |
| 3 | 54 | 0.26 | 0.73 | 13 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 4PNC · E. COLI methionine aminopeptidase in complex with inhibitor… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C3TPN7
- Elsewhere: RCSB PDB 4PNC · PDBe 4PNC · UniProt C3TPN7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.