MolNFT v1 · #103634 · protein

Crystal structure of a putative oxidoreductase from sinorhizobium meliloti 1021 in complex with NADP

4PMJ: “Crystal structure of a putative oxidoreductase from sinorhizobium meliloti 1021 in complex with NADP”. X-ray diffraction, 1 ligand (NAP), 1 pocket (best druggability 0.64). MolNFT v1 #103634 on GenesisL1: 3D structure, binding sites…

PDB: 4PMJ
Type: protein
Length: 281 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative oxidoreductase
EC: 1.1.1.-
UniProt: Q92NR7
Ligands: NAP
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative oxidoreductase (EC 1.1.1.-)	protein	281	46% helix, 14% strand	Q92NR7

Ligands and binding sites

NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	223	0.64	0.83	32	NAP

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

4PMJ · Crystal structure of a putative oxidoreductase from Sinorhizobium meliloti 1021 in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q92NR7
Elsewhere: RCSB PDB 4PMJ · PDBe 4PMJ · UniProt Q92NR7

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