MolNFT v1 · #103556 · protein

The crystal structure of native patatin

4PK9 · Patatin-17: “The crystal structure of native patatin”. X-ray diffraction, 2 pockets (best druggability 0.68). MolNFT v1 #103556 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4PK9
Type: protein
Length: 359 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Patatin-17
EC: 3.1.1.-
UniProt: Q8LPW4
Pockets: 2 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Patatin-17 (EC 3.1.1.-)	protein	359	50% helix, 16% strand	Q8LPW4

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	252	0.68	0.84	41	empty
2	222	0.52	0.76	29	empty

Compared structures

4PK9 · The Crystal Structure of Native Patatin · the same entry in another collection · chain A against A, TM-score 1.00
Q8LPW4 · AlphaFold monomer V2.0 prediction for patatin-17 (Q8LPW4) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8LPW4
Elsewhere: RCSB PDB 4PK9 · PDBe 4PK9 · UniProt Q8LPW4

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