MolNFT v1 · #103538 · protein
Crystal structure of designed cppr-polyg protein
4PJQ · Pentatricopeptide repeat protein: “Crystal structure of designed cppr-polyg protein”. X-ray diffraction, 2 pockets (best druggability 0.54). MolNFT v1 #103538 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4PJQ
- Type
- protein
- Length
- 420 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pentatricopeptide repeat protein
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Pentatricopeptide repeat protein | protein | 210 | 76% helix, 0% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.54 | 0.78 | 32 | empty |
| 2 | 115 | 0.39 | 0.75 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 379 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4PJQ · Crystal structure of designed cPPR-polyG protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4PJQ · PDBe 4PJQ
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