MolNFT v1 · #103449 · protein
Mature N-terminal domain of capsid protein from bovine leukemia virus
4PH2 · Blv capsid - N-terminal domain: “Mature N-terminal domain of capsid protein from bovine leukemia virus”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.74). MolNFT v1 #103449 on GenesisL1: 3D structure, binding…
- PDB
- 4PH2
- Type
- protein
- Length
- 254 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Blv capsid - N-terminal domain
- UniProt
- L0PI28
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Blv capsid - N-terminal domain | protein | 127 | 61% helix, 6% strand | L0PI28 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 953 | 0.74 | 0.77 | 91 | SO4, GOL |
Interfaces
1 interface between chains.
- A–B · 428 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 4PH2 · mature N-terminal domain of capsid protein from bovine leukemia virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L0PI28
- Elsewhere: RCSB PDB 4PH2 · PDBe 4PH2 · UniProt L0PI28
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