MolNFT v1 · #103438 · protein

Crystal structure of yetj from bacillus subtilis at pH 8

4PGR · Uncharacterized protein yetj: “Crystal structure of yetj from bacillus subtilis at pH 8”. X-ray diffraction, 3 pockets (best druggability 0.51). MolNFT v1 #103438 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4PGR
Type: protein
Length: 207 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein yetj
UniProt: O31539
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 83% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein yetj	protein	207	83% helix, 0% strand	O31539

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	164	0.51	0.78	21	empty
2	85	0.47	0.81	17	empty
3	64	0.31	0.75	19	empty

Compared structures

4PGR · Crystal structure of YetJ from Bacillus Subtilis at pH 8 · the same entry in another collection · chain A against A, TM-score 1.00
O31539 · AlphaFold monomer V2.0 prediction for uncharacterized protein yetj (O31539) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O31539
Elsewhere: RCSB PDB 4PGR · PDBe 4PGR · UniProt O31539

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