MolNFT v1 · #103209 · protein
Crystal structure of 8ANC195 Fab
4P9M · 8ANC195 light chain: “Crystal structure of 8ANC195 Fab”. X-ray diffraction, 1 ligand (NAG), 2 pockets (best druggability 0.50). MolNFT v1 #103209 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4P9M
- Type
- protein
- Length
- 438 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 8ANC195 light chain; 8ANC195 Fab heavy chain
- Ligands
- NAG
- Pockets
- 2 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 7% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | 8ANC195 light chain | protein | 214 | 7% helix, 50% strand | — |
| H | 8ANC195 Fab heavy chain | protein | 224 | 8% helix, 51% strand | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 300 | 0.50 | 0.73 | 45 | empty |
| 2 | 52 | 0.29 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- L–H · 1769 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 4P9M · Crystal structure of 8ANC195 Fab · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4P9M · PDBe 4P9M
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